Student Publications

Das Sharma, S., Metz, J*, H. Li, B.D. Hobson, N. Hornstein, D. Sulzer, G. Tang, and P.A. Sims. 2019. Widespread Alterations in Translation Elongation in the Brain of Juvenile Fmr1 Knockout Mice. Cell Rep. 26:3313-3322 e3315.

Decker, M., J. Leslie, Q. Liu, and L. Ding. 2018. Hepatic thrombopoietin is required for bone marrow hematopoietic stem cell maintenance. Science. 360:106-110.

Eckels, E.C., S. Haldar, R. Tapia-Rojo, J.A. Rivas-Pardo, and J.M. Fernandez. 2019. The Mechanical Power of Titin Folding. Cell Rep. 27:1836-1847 e1834.

Eckels, E.C., R. Tapia-Rojo, J.A. Rivas-Pardo, and J.M. Fernandez. 2018. The Work of Titin Protein Folding as a Major Driver in Muscle Contraction. Annu Rev Physiol. 80:327-351.

Garcia, E.J., J.D. Vevea, and L.A. Pon. 2018. Lipid droplet autophagy during energy mobilization, lipid homeostasis and protein quality control. Front Biosci (Landmark Ed). 23:1552-1563.

Groopman, E., D. Goldstein, and A. Gharavi. 2019a. Diagnostic Utility of Exome Sequencing for Kidney Disease. Reply. N Engl J Med. 380:2080-2081.

Groopman, E.E., and A.G. Gharavi. 2019. Expanding opportunities and emerging challenges: broadening the scope of genetic testing in nephrology. Kidney Int. 95:743-746.

Groopman, E.E., M. Marasa, S. Cameron-Christie, S. Petrovski, V.S. Aggarwal, H. Milo-Rasouly, Y. Li, J. Zhang, J. Nestor, P. Krithivasan, W.Y. Lam, A. Mitrotti, S. Piva, B.H. Kil, D. Chatterjee, R. Reingold, D. Bradbury, M. DiVecchia, H. Snyder, X. Mu, K. Mehl, O. Balderes, D.A. Fasel, C. Weng, J. Radhakrishnan, P. Canetta, G.B. Appel, A.S. Bomback, W. Ahn, N.S. Uy, S. Alam, D.J. Cohen, R.J. Crew, G.K. Dube, M.K. Rao, S. Kamalakaran, B. Copeland, Z. Ren, J. Bridgers, C.D. Malone, C.M. Mebane, N. Dagaonkar, B.C. Fellstrom, C. Haefliger, S. Mohan, S. Sanna-Cherchi, K. Kiryluk, J. Fleckner, R. March, A. Platt, D.B. Goldstein, and A.G. Gharavi. 2019b. Diagnostic Utility of Exome Sequencing for Kidney Disease. N Engl J Med. 380:142-151.

Hobson, B.D., and P.A. Sims. 2019. Critical Analysis of Particle Detection Artifacts in Synaptosome Flow Cytometry. eNeuro. 6.

Kratchmarov, R., A.M. Magun, and S.L. Reiner. 2018a. TCF1 expression marks self-renewing human CD8(+) T cells. Blood Adv. 2:1685-1690.

Kratchmarov, R., S. Viragova, M.J. Kim, N.J. Rothman, K. Liu, B. Reizis, and S.L. Reiner. 2018b. Metabolic control of cell fate bifurcations in a hematopoietic progenitor population. Immunol Cell Biol.
Ji, B.W., R.U. Sheth*, P.D. Dixit, Y. Huang, A. Kaufman, H.H. Wang, and D. Vitkup. 2019. Quantifying spatiotemporal variability and noise in absolute microbiota abundances using replicate sampling. Nat Methods. 16:731-736.

Kumar, B.V., T.J. Connors, and D.L. Farber. 2018. Human T Cell Development, Localization, and Function throughout Life. Immunity. 48:202-213.

Kumar, B.V., Kratchmarov, R., Miron, M., Carpenter, D., Senda, T., Lerner, H., Friedman, A., Reiner, S.L. and Farber, D.L. (2018) Functional heterogeneity of human tissue resident memory T cells based on dye efflux capacities. JCI Insight. 3: 123568. doi: 10.1172/jci.insight.123568

Lee, H., S. Bao, Y. Qian, S. Geula, J. Leslie, C. Zhang, J.H. Hanna, and L. Ding. 2019. Stage-specific requirement for Mettl3-dependent m(6)A mRNA methylation during haematopoietic stem cell differentiation. Nat Cell Biol. 21:700-709.

Liu, B., B.W. Lee, K. Nakanishi, A. Villasante, R. Williamson, J. Metz, J. Kim, M. Kanai, L. Bi, K. Brown, G. Di Paolo, S. Homma, P.A. Sims, V.K. Topkara, and G. Vunjak-Novakovic. 2018. Cardiac recovery via extended cell-free delivery of extracellular vesicles secreted by cardiomyocytes derived from induced pluripotent stem cells. Nat Biomed Eng. 2:293-303.

Siegmund, S.E., R. Grassucci, S.D. Carter, E. Barca, Z.J. Farino, M. Juanola-Falgarona, P. Zhang, K. Tanji, M. Hirano, E.A. Schon, J. Frank, and Z. Freyberg. 2018. Three-Dimensional Analysis of Mitochondrial Crista Ultrastructure in a Patient with Leigh Syndrome by In Situ Cryoelectron Tomography. iScience. 6:83-91.

Steinfeld, J.B., O. Belan, Y. Kwon, T. Terakawa, A. Al-Zain, M.J. Smith, J.B. Crickard, Z. Qi, W. Zhao, R. Rothstein, L.S. Symington, P. Sung, S.J. Boulton, and E.C. Greene. 2019. Defining the influence of Rad51 and Dmc1 lineage-specific amino acids on genetic recombination. Genes Dev.

Tapia-Rojo, R., E.C. Eckels*, and J.M. Fernandez. 2019. Ephemeral states in protein folding under force captured with a magnetic tweezers design. Proc Natl Acad Sci U S A. 116:7873-7878.

Tenen, C.C., and I. Greenwald. 2019. Cell Non-autonomous Function of daf-18/PTEN in the Somatic Gonad Coordinates Somatic Gonad and Germline Development in C. elegans Dauer Larvae. Curr Biol. 29:1064-1072 e1068.

Thomas, D.G., A.C. Doran, P. Fotakis, M. Westerterp, P. Antonson, H. Jiang, X.C. Jiang, J.A. Gustafsson, I. Tabas, and A.R. Tall. 2018. LXR Suppresses Inflammatory Gene Expression and Neutrophil Migration through cis-Repression and Cholesterol Efflux. Cell Rep. 25:3774-3785 e3774.

Yen, B., K.T. Fortson, N.J. Rothman, N. Arpaia, and S.L. Reiner. 2018. Clonal Bifurcation of Foxp3 Expression Visualized in Thymocytes and T Cells. Immunohorizons. 2:119-128.

Zhao, J., A.X. Chen*, R.D. Gartrell, A.M. Silverman, L. Aparicio, T. Chu, D. Bordbar, D. Shan, J. Samanamud, A. Mahajan, I. Filip, R. Orenbuch, M. Goetz, J.T. Yamaguchi, M. Cloney, C. Horbinski, R.V. Lukas, J. Raizer, A.I. Rae, J. Yuan, P. Canoll, J.N. Bruce, Y.M. Saenger, P. Sims, F.M. Iwamoto, A.M. Sonabend, and R. Rabadan. 2019. Immune and genomic correlates of response to anti-PD-1 immunotherapy in glioblastoma. Nat Med. 25:462-469.

MD-PhD students in bold

*co-first author